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Using SimulATe to model the effects of antibiotic selective pressure on the dynamics of pathogenic bacterial populations

JOURNAL ARTICLE published 1 January 2019 in Biology Methods and Protocols

Research funded by Fundação para a Ciência e a Tecnologia (UID/CED/00194/2013) | National Funds FCT/MEC (SFRH/BPD/103613/2014)

Authors: Pedro H C David | Xana Sá-Pinto | Teresa Nogueira

https://doi.org/10.1093/biomethods/bpz004 Actions

A UV cross-linking method combined with infrared imaging to analyse RNA–protein interactions

JOURNAL ARTICLE published 1 January 2017 in Biology Methods and Protocols

Authors: Tony Malmqvist | Carl Spickett | Jean-Marc Gallo | Karen Anthony

https://doi.org/10.1093/biomethods/bpx009 Actions

An advanced protocol for profiling RNA-binding proteins in Arabidopsis using plant phase extraction

JOURNAL ARTICLE published 10 January 2023 in Biology Methods and Protocols

Authors: Yong Zhang | Ye Xu | Todd H Skaggs | Jorge F S Ferreira | Xuemei Chen | Devinder Sandhu

https://doi.org/10.1093/biomethods/bpad016 Actions

Comprehensive microbiome causal mediation analysis using MiMed on user-friendly web interfaces

JOURNAL ARTICLE published 10 January 2023 in Biology Methods and Protocols

Research funded by Korean government (2021R1C1C1013861)

Authors: Hyojung Jang | Solha Park | Hyunwook Koh

https://doi.org/10.1093/biomethods/bpad023 Actions

Purification of specific DNA species using the CRISPR system

JOURNAL ARTICLE published 1 January 2019 in Biology Methods and Protocols

Research funded by Grant-in-Aid for Scientific Research (#15K06895) | Grant-in-Aid for Scientific Research (#15H04329) | Transcription Cycle (#15H01354)

Authors: Toshitsugu Fujita | Hodaka Fujii

https://doi.org/10.1093/biomethods/bpz008 Actions

Multiparameter flow cytometric detection and analysis of rare cells in in vivo models of cancer metastasis

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

Research funded by National Cancer Institute (U54CA143803,CA163124,CA093900,CA143055)

Authors: Mikaela M Mallin | Louis T A Rolle | Kenneth J Pienta | Sarah R Amend

https://doi.org/10.1093/biomethods/bpae026 Actions

Development of a highly sensitive TaqMan method based on multi-probe strategy: its application in ASFV detection

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

Research funded by National Natural Science Foundation of China (U21A20256) | Key R & D Program Projects in Zhejiang Province (2020C02013) | Zhejiang University (SJS201811)

Authors: Shuxiang Ding | Tianren Shen | Zixuan Feng | Sujing Diao | Yan Yan | Zhenkun Du | Yulan Jin | Jinyan Gu | Jiyong Zhou | Min Liao | Weiren Dong

https://doi.org/10.1093/biomethods/bpae011 Actions

Utilization of dried and long-term stored polyacrylamide gels for the advanced proteomic profiling of mitochondrial contact sites from rat liver

JOURNAL ARTICLE published 1 January 2018 in Biology Methods and Protocols

Research funded by Science Foundation Ireland (SFI 16/RI/3701)

Authors: Sandra Murphy | Michael Henry | Paula Meleady | Kay Ohlendieck

https://doi.org/10.1093/biomethods/bpy008 Actions

Correction to: An efficient procedure for the recovery of DNA from formalin-fixed paraffin-embedded tissue sections

JOURNAL ARTICLE published 10 January 2023 in Biology Methods and Protocols

https://doi.org/10.1093/biomethods/bpad003 Actions

An optimized protocol for generating appendage-bearing skin organoids from human-induced pluripotent stem cells

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

Authors: Imaan Ahmed | Jane Sun | Jason Brown | Kiarash Khosrotehrani | Abbas Shafiee

https://doi.org/10.1093/biomethods/bpae019 Actions

Stabilized generation of human iPSC-derived liver organoids using a modified coating approach

JOURNAL ARTICLE published 10 January 2023 in Biology Methods and Protocols

Research funded by AMED (JP22bm0304002h0310)

Authors: Yu Kamishibahara | Satoshi Okamoto | Takuya Ohkuma | Hideki Taniguchi

https://doi.org/10.1093/biomethods/bpac034 Actions

Effect of community-based lifestyle education intervention to reduce cardiovascular diseases risk factors among vulnerable population in Dodoma city, Tanzania: a cluster randomized controlled trial study protocol

JOURNAL ARTICLE published 22 January 2021 in Biology Methods and Protocols

Authors: Nyasiro S Gibore | Mariam J Munyogwa | Secilia K Ng’weshemi | Ainory P Gesase

https://doi.org/10.1093/biomethods/bpab019 Actions

A cost-effective technique for generating preservable biomass smoke extract and measuring its effect on cell receptor expression in human bronchial epithelial cells

JOURNAL ARTICLE published 1 January 2018 in Biology Methods and Protocols

Authors: K C Rajendra | Graeme R Zosky | Shakti D Shukla | Ronan F O’Toole

https://doi.org/10.1093/biomethods/bpy010 Actions

Semi-automatic detection of honeybee brood hygiene—an example of artificial learning to facilitate ethological studies on social insects

JOURNAL ARTICLE published 10 January 2022 in Biology Methods and Protocols

Research funded by Fund for Regional Development (85009207) | Sustainable Management of Resilient Bee Populations (613960)

Authors: Philipp Batz | Andreas Ruttor | Sebastian Thiel | Jakob Wegener | Fred Zautke | Christoph Schwekendiek | Kaspar Bienefeld

https://doi.org/10.1093/biomethods/bpac005 Actions

MALDI-TOF MS protein fingerprinting of mixed samples

JOURNAL ARTICLE published 1 January 2019 in Biology Methods and Protocols

Authors: Michael A Reeve | Denise Bachmann

https://doi.org/10.1093/biomethods/bpz013 Actions

Bringing science to the public in the light of evolution

JOURNAL ARTICLE published 10 January 2023 in Biology Methods and Protocols

Research funded by Swiss National Science Foundation (CRAGP3_199775/1)

Authors: Marie-Claude Blatter | Monique Zahn-Zabal | Samuel Moix | Béatrice Pichon | Christophe Dessimoz | Natasha Glover

https://doi.org/10.1093/biomethods/bpad040 Actions

The effects of 105 biological, socioeconomic, behavioral, and environmental factors on the risk of SARS-CoV-2 infection and a severe course of COVID-19: a prospective, explorative cohort study

JOURNAL ARTICLE published 10 January 2022 in Biology Methods and Protocols

Research funded by Czech Science Foundation (22-20785S)

Authors: Jaroslav Flegr | Pavel Flegr | Lenka Příplatová

https://doi.org/10.1093/biomethods/bpac030 Actions

Optimized protocol for shotgun label-free proteomic analysis of pancreatic islets

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

Authors: Juliana SanchesTrevizol | Aline Dionizio | Aislan Quintiliano Delgado | Talita Mendes Oliveira Ventura | Caroline Fernanda da Silva Ribeiro | Nathalia Rabelo Buzalaf | José Roberto Bosqueiro | Marília Afonso Rabelo Buzalaf

https://doi.org/10.1093/biomethods/bpae003 Actions

Efficient regeneration of protoplasts from Solanum lycopersicum cultivar Micro-Tom

JOURNAL ARTICLE published 11 January 2024 in Biology Methods and Protocols

Research funded by Samsung Science and Technology Foundation (SSTF-BA2001-10)

Authors: Yeong Yeop Jeong | Yoo-Sun Noh | Suk Weon Kim | Pil Joon Seo

https://doi.org/10.1093/biomethods/bpae008 Actions

ACValidator: A novel assembly-based approach for in silico verification of circular RNAs

JOURNAL ARTICLE published 1 January 2020 in Biology Methods and Protocols

Research funded by Department of Health Services (DHS) and the State of Arizona (ADHS14-052688) | National Institute on Aging of the National Institutes of Health (P30AG019610)

Authors: Shobana Sekar | Philipp Geiger | Jonathan Adkins | Erica Tassone | Geidy Serrano | Thomas G Beach | Winnie S Liang

https://doi.org/10.1093/biomethods/bpaa010 Actions
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